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Projects

Application of Quantitative Molecular Methods to C...

This project supports development for two lab-based quantitative molecular methods for more rapid, accurate detection of Alexandrium catenella resting cysts in sediment from the Gulf of Maine, Puget Sound, and ...
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Applied Ecophysiology of Marine Aquaculture Specie...

Forecasting environmental interactions of marine aquaculture activities requires an in-depth understanding of the environment and the species farmed. We are investigating two promising candidates for marine aquaculture: red porgy and ...
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Aquaculture and Eutrophication in Long Island Soun...

Eutrophication is the overabundance of nutrients in a body of water that results in harmful algal blooms, fish kills, and in some cases ecosystem collapse. We are investigating the feasibility ...
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Aquaculture Mapping Atlas and FARM Model

We are integrating two tools commonly used to plan for and site aquaculture: the Farm Aquaculture Resource Management (FARM) Model and the Connecticut Aquaculture Mapping Atlas. This improved tool will ...
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Are Growth and Toxicity of the Dinoflagellate Alex...

Blooms of Alexandrium fundyense result in economic losses to fisheries, aquaculture, and pose public health risks. Typically, A. fundyense growth and toxicity are seen as dependent on light, temperature, and ...
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Are Marine Protected Areas Working in the U.S. Vir...

We used a decade of underwater monitoring data to evaluate the effectiveness of no-take and partial-take Marine Protected Areas (MPAs) located in the U.S. Virgin Islands in the context of ...
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Assessing Biogeography, Conditions, and Marine Pro...

In 2001, state and federal agencies established the Tortugas Ecological Reserve to protect extensive unspoiled shallow-water coral reefs that support a wide variety of marine life off the Florida Keys ...
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Assessing Coral Bleaching in Four U.S. Caribbean M...

In 2005, high sea temperatures caused coral bleaching in the Caribbean. The goals of this this project were to characterize the spatial extent of coral bleaching and recovery and to ...
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Assessing Social Values Relative to Offshore Wind ...

The Bureau of Ocean Energy Management’s (BOEM’s) Office of Renewable Energy Programs oversees development of offshore renewable energy projects on the Outer Continental Shelf (OCS). BOEM identified wind energy areas ...
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Assessing Societal Impacts of Harmful Macroalgae B...

This study will use a mixed methods approach to examine how Sargassum events and their mitigation in the Caribbean affect multiple dimensions of social resilience, including economic impacts, human wellbeing, ...
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News

New Report Evaluates Health of U.S. Coral Reefs

Cover page of Coral Reef Condition: A Status Report for U.S. Coral Reefs. Credit NOAA. NCCOS scientists contributed to the newly released national status report on U.S. coral reefs. Drawing ...
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NCCOS Supports Inception of Harmful Algal Bloom Mo...

Clams are gathered for testing in Southeast Alaska. Photo Credit: Bethany Goodrich, Southeast Sustainable Partnership Alaska Natives rely on a variety of marine resources, including shellfish, as part of their ...
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Brucellosis in Stranded SC Bottlenose Dolphins Coi...

NCCOS tested 282 stranded dolphins in South Carolina for brucellosis, caused by the bacterial pathogen Brucella ceti. Nearly 32% tested positive. Results show that Brucella ceti was detected in a higher ...
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Newly Deployed NCCOS Domoic Acid Sensor Detects To...

Working with colleagues at the Woods Hole Oceanographic Institution (WHOI), NCCOS scientists have calibrated and deployed NCCOS-developed domoic acid (DA) sensors on two Environmental Sample Processors (ESPs). These 2020 dockside ...
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Linking Chlorophyll Concentration and Wind Pattern...

The California Current System (CCS) is a highly productive region because of wind driven upwelling which supplies nutrients to the euphotic zone. Few studies have compared upwelling and algae blooms ...
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Predicting the Impacts of Climate Change on Seagra...

In a treatise, professor and seagrass ecologist/physiologist Dr. Richard Zimmerman reflects on the history of seagrass ecosystems research and contemplates the future of seagrasses under human disturbance and a changing ...
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Annual Maryland Shellfish Aquaculture Conference H...

Oyster farmers in Chesapeake Bay, Maryland, 2016. Credit: NOAA. NCCOS's Dr. Suzanne Bricker helped organize, and participated in, the 2020 Maryland Shellfish Aquaculture Conference, held online last week as a ...
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NCCOS, Partners Release New Gulf Coast Monitoring ...

NCCOS, USGS, and NOAA Fisheries developed a new web-accessible database of water quality and habitat monitoring and mapping programs in the Gulf of Mexico. The database, called the Gulf Coast ...
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NOAA Intervention Strategy Seeks to Stem Loss of U...

NOAA Action Plan on Coral Intervention. Credit: NOAA. Rapidly deteriorating environmental conditions are threatening coral reefs worldwide, leading to a re-evaluation of long-standing conservation strategies. In response to recommendations from ...
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Hurricane Harvey Water Quality Effects Documented ...

NOAA NWS radar mosaic of Hurricane Harvey on 25 August 2017, DBZ = radar reflectivity factor of precipitation). Credit: NOAA NWS. An NCCOS-supported study analyzed the short- and long-term water ...
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Products

Maps, Tools & Applications

NCCOS developed the Algal Bloom Monitoring System to routinely deliver near real-time products for use in locating, monitoring and quantifying algal blooms in coastal and lake regions of the US. This application delivers a suite of bloom detection products in the form of geographic based images. At this time products are available for selected regions. New products are being evaluated, and new regions are being considered; as they are proven useful, they will be made available through this system.

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NCCOS developed the Algal Bloom Monitoring System to routinely deliver near real-time products for use in locating, monitoring and quantifying algal blooms in coastal and lake regions of the US. This application delivers a suite of bloom detection products in the form of geographic based images. At this time products are available for selected regions. New products are being evaluated, and new regions are being considered; as they are proven useful, they will be made available through this system.

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NCCOS developed the Algal Bloom Monitoring System to routinely deliver near real-time products for use in locating, monitoring and quantifying algal blooms in coastal and lake regions of the US. This application delivers a suite of bloom detection products in the form of geographic based images. At this time products are available for selected regions. New products are being evaluated, and new regions are being considered; as they are proven useful, they will be made available through this system.

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NCCOS developed the Algal Bloom Monitoring System to routinely deliver near real-time products for use in locating, monitoring and quantifying algal blooms in coastal and lake regions of the US. This application delivers a suite of bloom detection products in the form of geographic based images. At this time products are available for selected regions. New products are being evaluated, and new regions are being considered; as they are proven useful, they will be made available through this system.

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NCCOS developed the Algal Bloom Monitoring System to routinely deliver near real-time products for use in locating, monitoring and quantifying algal blooms in coastal and lake regions of the US. This application delivers a suite of bloom detection products in the form of geographic based images. At this time products are available for selected regions. New products are being evaluated, and new regions are being considered; as they are proven useful, they will be made available through this system.

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The Ecological Assessment of Storm Impacts website includes a database of chemical and toxicological information on contaminants permitted for use in the St. Johns River Watershed, Florida, and the lower Columbia River watershed in Oregon and Washington.
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We gathered a time series of aerial photographs, mapped coral reefs, mangroves, and seagrasses, and summarized previous ecological studies into a descriptive report for use by scientists and resource managers.
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NCCOS developed the Algal Bloom Monitoring System to routinely deliver near real-time products for use in locating, monitoring and quantifying algal blooms in coastal and lake regions of the US. This application delivers a suite of bloom detection products in the form of geographic based images. At this time products are available for selected regions. New products are being evaluated, and new regions are being considered; as they are proven useful, they will be made available through this system.

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BIOMappers let you interactively view data, aerial imagery, dive photography, underwater video and related publications developed for the benthic habitat mapping of many U.S. coral reefs. In addition to viewing benthic habitat data, you can examine the attributes of the data and show different thematic representations. Photos and videos taken during dive missions are linked to the location of the dives.
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The Habitat Digitizer Extension is a GIS tool that was developed to delineate features by visually interpreting georeferenced images and also to select attributes using a dialog containing a custom hierarchical classification scheme. This GIS tool can be used to develop habitat map products for resource analysis and management.
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Data & Publications

A Pilot Survey of Deepwater Coral/Sponge Assemblages and their Susceptibility to Fishing/Harvest Impacts at the Olympic Coast National Marine Sanctuary (OCNMS): Cruise Report for NOAA Ship McARTHUR II Cruise AR-04-04 Leg 2

The offshore shelf and canyon habitats of the OCNMS (Fig. 1) are areas of high primary productivity and biodiversity that support extensive groundfish fisheries. Recent acoustic surveys conducted in these waters have indicated the presence of hard-bottom substrates believed to ...
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A Pilot Survey of Deepwater Coral/Sponge Assemblages and their Susceptibility to Fishing/Harvest Impacts at the Olympic Coast National Marine Sanctuary (OCNMS): Cruise Report for NOAA Ship McARTHUR II Cruise AR-04-04 Leg 2

The offshore shelf and canyon habitats of the OCNMS (Fig. 1) are areas of high primary productivity and biodiversity that support extensive groundfish fisheries. Recent acoustic surveys conducted in these waters have indicated the presence of hard-bottom substrates believed to ...
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A quantitative genetic approach to assess the evolutionary potential of a coastal marine fish to ocean acidification

Assessing the potential of marine organisms to adapt genetically to increasing oceanic CO2 levels requires proxies such as heritability of fitness-related traits under ocean acidification (OA). We applied a quantitative genetic method to derive the first heritability estimate of survival ...
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A quantitative real-time PCR assay for the identification and enumeration of Alexandrium cysts in marine sediments

Harmful algal blooms (HABs) are a global problem that affects both human and ecosystem health. One of the most serious and widespread HAB poisoning syndromes is paralytic shellfish poisoning, commonly caused by Alexandrium spp. dinoflagellates. Like many toxic dinoflagellates, Alexandrium ...
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A Reduced Complexity, Hybrid Empirical-Mechanistic Model of Eutrophication and Hypoxia in Shallow Marine Ecosystems

Numerical simulation models have a long history as research tools for the study of coastal marine ecosystems, and are increasingly being used to inform management, particularly related to nutrient-fueled eutrophication. Demand for modeling assessments is rapidly increasing, and managers need ...
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A surveillance strategy for invasive species of concern in deepwater habitats of the Northwestern Hawaiian Islands

This document provides strategies to detect deepwater invasive species in the Northwestern Hawaiian Islands (NWHI) in support of the Papahanaumokuakea Marine National Monument (PMNM). The strategies use technical diving to conduct visual surveys and focus on two invasive species of ...
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Acoustic tracking of reef fishes to elucidate habitat utilization patterns and residence times inside and outside marine protected areas around the island of St. John, USVI

This technical memorandum describes a developing project under the direction of NOAA's Biogeography Branch in consultation with the National Park Service and US Geological Survey to understand and quantify spatial patterns and habitat affinities of reef fishes in the US ...
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Advancing Tools for Modeling, Forecasting and Managing for Vibrio spp. in Washington State

The vast majority of Vibrio-related illnesses in Washington State are associated with a single species, Vibrio parahaemolyticus (Vp). The intent of this workshop was to bring together tribal and non-tribal industry representatives, Federal subject matter experts, State Shellfish Control Authorities, ...
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An Analysis of Chemical Contaminants in Sediments and Fish from Cocos Lagoon, Guam

As part of the NOAA Coral Reef Conservation Program (CRCP) jurisdictional priority gathering, local agencies in Guam identified Cocos Lagoon as an area potentially impacted by land-based sources of pollution. The US Coast Guard operated a Long Range Navigation (LORAN) ...
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An assessment of chemical contaminants detected in passive water samplers deployed in the St. Thomas east end reserves (STEER)

This report is the second in a series from a project to assess land-based sources of pollution (LBSP) and effects in the St. Thomas East End Reserves (STEER) in St. Thomas, USVI, and is the result of a collaborative effort ...
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General Pages

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NOAA Internship Opportunities

Finding Physiological Features for Fisheries Model...

The Ecosystem Dynamics and Assessment Branch (EDAB) at the Northeast Fisheries Science Center (NEFSC) is looking for a summer intern to work closely the branch to aid in the extension ...
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How accurate are the “best” commercial...

In-season near real-time management of catch quotas are enabled through the use of a substantial at-sea observer program. On larger vessels, catch weights are obtained through the use of motion ...
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(Science) Investigating animal presence throughout...

Intern will assist in data management and processing for several on-going sanctuary research projects, including acoustic telemetry downloads and identifications. Expected product may include some analyses of acoustic telemetry data, ...
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Development and Test of NOAA’s Next Generati...

Support the development, test, and evaluation of NOAA’s next generation of long term ocean current and wave measurement systems. Participate in hands-on field testing of new current and wave sensors ...
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Air-sea interaction from the Tropics to Arctic

Accurate air-sea fluxes are essential to weather-climate forecast/projection. Recently developed autonomous observing technology (e.g., Saildrones) enable us to collect in situ flux data in remote region of the world, such ...
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Development of automated image analysis for underw...

Roughly 40 million images of the sea floor have been collected by the NOAA Habcam vehicle since 2012. Only about 2% of these have been annotated by humans for objects ...
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Recreation and Tourism Intern

As an intern, you will work with the Communications Team to implement NOAA’s Office of National Marine Sanctuaries mission and enhance visibility of responsible recreation opportunities in national marine sanctuaries ...
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Media Relations Volunteer Internship

The Communications Team produces and distributes NOAA's Office of National Marine Sanctuaries messages through a variety of channels to a diverse audience – Capitol Hill legislators and staff, agency departments, ...
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Constituent and Legislative Affairs Internship

NOAA's Office of National Marine Sanctuaries conducts outreach with members of Congress and constituent groups on key issues, such as marine conservation, recreational opportunities and maritime heritage. Our office is ...
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Identifying and Summarizing Research: Marine Mamma...

NOAA Fisheries is conducting vulnerability assessments to identify which marine protected species are vulnerable to climate change and what makes them vulnerable. These vulnerability assessments use existing life history information ...
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