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Projects

A Baseline Chemical Contaminants Study of Marine S...

We are assessing the scope and extent of land-based sources of chemical contaminants in the marine sediments of Nu’uuli Pala Lagoon in American Samoa. Currently, there are no contaminant data ...

A Chemical Contaminant Characterization of Waters ...

We are assessing the scope and extent of land-based sources of chemical contaminants in the marine waters surrounding Cocos Island, Guam. Previous NCCOS studies identified a gap in polychlorinated biphenyls ...

A Cost-benefit Analysis of Green-gray Infrastructu...

Locations of the two estuaries, Grays River and Coos Bay, that are the focus of this project. Credit: Oregon State University. We are evaluating the tradeoffs between gray and green ...

A Marine Biogeographic Assessment of the Northwest...

We conducted a biogeographic assessment of the Northwestern Hawaiian Islands, the second largest marine protected area in the world. The effort was the most comprehensive view of the area’s oceanography, ...

A Mechanism Based Intervention for Brevetoxin Indu...

The Florida manatee inhabits environments in which blooms of the toxic dinoflagellate, Karenia brevis, frequently occur. K. brevis produces brevetoxins, that result in fish kills, contamination of shellfish, and respiratory ...

A Multidisciplinary, Integrative Approach to Valui...

We are estimating the economic value from natural and nature-based infrastructure investments to stabilize coastline. Using hazard risks along the U.S. Pacific Northwest coast, we are assigning a dollar value ...

A Pilot Assessment of Fish Habitat in Choptank Riv...

Fish and shellfish populations depend on healthy habitats. To help understand and manage these habitats in the Chesapeake Bay, we will develop a GIS-based analytical framework that might be used ...

A Study of Gambierdiscus 'Super Bugs' and Ciguatox...

Ciguatera fish poisoning (CFP) is the most common algal-borne illness worldwide. It is a debilitating syndrome caused by consumption of fish contaminated with ciguatoxins (CTXs) produced by the dinoflagellate Gambierdiscus ...

A Synthesis of Chemical Contaminants Monitoring Da...

Between 2007 and 2018, the National Park Service and its partners in association with NOAA’s National Mussel Watch Program collected bay mussel (Mytilus trossulus) tissue samples from Alaska's southeast and ...

News

NOS Leadership Visits New Hampshire to Discuss Pav...

In early August, leadership from NOAA’s National Ocean Service (NOS) visited NCCOS-funded project sites in New Hampshire to discuss ongoing coastal pavement resilience research.  Coastal communities rely almost exclusively on ...

Identifying Pathways to Match Dredged Material wit...

Researchers collecting elevation data during an initial site visit. Source: Keeping it in the System Story Map For many coastal communities, marshes help reduce coastal flooding by absorbing wave energy ...

Twenty Years of U.S. Caribbean Seafloor Mapping Ab...

NCCOS scientists collected a wealth of data on 23 cruises in 20 years. Since 2004, NCCOS has conducted seafloor mapping of the U.S. Caribbean to fill critical information gaps that ...

Model Predicts Resilience of Roads After Flood Eve...

With coastal flooding becoming more common, roadway resilience to such events is top of mind for many communities. Pavements are highly susceptible to water infiltration during floods, resulting in damage ...

New Guide Helps Scientists Evaluate Coral Restorat...

Diver "plants" corals from aquarium nursery at underwater site in the Florida Keys. Credit: Rachel Hancock Davis. As coral reef restoration efforts increase in number and scale around the globe, ...

Great Star Corals Genetically Similar at Different...

Dr. Alexis Sturm carries coral samples during a deep dive in Flower Garden Banks National Marine Sanctuary. Credit: Dr. Joshua Voss. NCCOS-funded researchers found that great star coral populations across ...

Enhancing Shallow Coral Reef Management: A Unified...

U.S. states and territories require various data types to make informed management decisions on coral reef ecosystems. However, collecting coral reef data is expensive, time consuming, and resource intensive. To ...

Survey Identifies Caribbean Residents' Perceptions...

Floating Sargassum seaweed in the Caribbean provides habitat and nurseries for a variety of marine life. However, in recent years, the region has seen a dramatic increase in the extent ...

Characterizing Deep Water Octocoral Microbiomes in...

An NCCOS- and RESTORE-funded study characterized the microbiomes (a collection of microbes) of four octocoral species, i.e. soft corals and sea fans, from low-light (mesophotic) to deep-sea habitats in the ...

Harmful Algal Bloom Toxin Sensor Prepared for Time...

Left: NCCOS scientists Tina Mikulski calibrating the NCCOS domoic acid toxin sensor on Environmental Sample Processor ‘ESPeddie’, in preparation for deployment off the WA coast. Right: NCCOS Scientist Rayanne Scarmeas ...

Products

Maps, Tools & Applications

We conducted benthic habitat mapping of shallow-water coral reef areas off Puerto Rico and the U.S. Virgin Islands to inventory the coral reefs and related bottom types. Such an inventory is needed for successful coral reef ecosystem management. This represents the first U.S. coral reef area to be mapped under the purview of the U.S. Coral Reef Task Force.
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Since 2004, we have been conducting seafloor mapping of the U.S. Caribbean, to fill critical informational gaps to support improved management measures in the U.S. Virgin Islands and Puerto Rico, targeting high priority sites identified by Jurisdictional managers. This project uses NOAA ship and aircraft to collect and provide detailed information from which we can produce maps of benthic habitats.
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We mapped the shallow-water benthic habitats of two areas off southwest Puerto Rico. This effort improves on previous NOAA benthic habitat maps by using more recent imagery, a smaller minimum mapping unit, and a refined classification scheme. The new maps will support ongoing conservation and management efforts in the region, including restoration of Guánica Bay.
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We developed benthic habitat maps for shallow areas (< 30 m) around St. John and moderate-depth areas (30–60 m) south of St. John in the U.S. Virgin Islands. These maps are helping local managers develop place-based strategies to address and remedy specific threats to coral reefs inside Virgin Islands National Park and the Virgin Islands Coral Reef National Monument. Project PageView Product

The online Benthic Habitat Viewer (BHV) database, developed and managed by the National Centers for Coastal Ocean Science (NCCOS), provides easy access to a large database of underwater imagery characterizing coral reef organisms and habitats. The database holds over 9000 underwater seafloor images, taken during mapping missions from 2004-2006 in Puerto Rico and the U.S. Virgin Islands.
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This page provides access to NOAA aerial digital photos (1999 and older) from Hawaii, U.S. Virgin Islands, and Puerto Rico.
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BIOMappers let you interactively view data, aerial imagery, dive photography, underwater video and related publications developed for the benthic habitat mapping of many U.S. coral reefs. In addition to viewing benthic habitat data, you can examine the attributes of the data and show different thematic representations. Photos and videos taken during dive missions are linked to the location of the dives.
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This Data Explorer Map contains ecological and socioeconomic datasets including management boundaries, human use activities, fish and oyster surveys, and benthic habitats in the NOAA Choptank Habitat Focus Area (HFA) Ecosystem Assessment. The tool allows managers, stakeholders and the general public to visualize data that assists with decision-making about management of the ecosystem in the Choptank watershed.
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BIOMappers let you interactively view data, aerial imagery, dive photography, underwater video and related publications developed for the benthic habitat mapping of many U.S. coral reefs. In addition to viewing benthic habitat data, you can examine the attributes of the data and show different thematic representations. Photos and videos taken during dive missions are linked to the location of the dives.
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BIOMappers let you interactively view data, aerial imagery, dive photography, underwater video and related publications developed for the benthic habitat mapping of many U.S. coral reefs. In addition to viewing benthic habitat data, you can examine the attributes of the data and show different thematic representations. Photos and videos taken during dive missions are linked to the location of the dives.
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Data & Publications

A comparison of seafloor habitats and associated benthic fauna in areas open and closed to bottom trawling along the central California continental shelf

A number of studies have shown that mobile, bottom-contact fishing gear (such as otter trawls) can alter seafloor habitats and associated biota. Considerably less is known about the recovery of these resources following such disturbances, though this information is critical ...

A comprehensive investigation of mesophotic coral ecosystems in the Hawaiian Archipelago

Although the existence of coral-reef habitats at depths to 165 m in tropical regions has been known for decades, the richness, diversity, and ecological importance of mesophotic coral ecosystems (MCEs) has only recently become widely acknowledged. During an interdisciplinary effort ...

A coupled physical-biological model of the Northern Gulf of Mexico shelf: model description, validation and analysis of phytoplankton variability

The Texas-Louisiana shelf in the Northern Gulf of Mexico receives large inputs of nutrients and freshwater from the Mississippi/Atchafalaya River system. The nutrients stimulate high rates of primary production in the river plume, which contributes to the development of a ...

A decade and a half of Pseudo-nitzschia spp. and domoic acid along the coast of southern California

Blooms of the marine diatom genus Pseudo-nitzschia that produce the neurotoxin domoic acid have been documented with regularity along the coast of southern California since 2003, with the occurrence of the toxin in shellfish tissue predating information on domoic acid ...

A Decade of Water Level Changes along the New River Estuary in North Carolina, USA

From 2008-2018, our program evaluated coastal marsh resilience to changes in inundation along the New River Estuary in Marine Corps Base Camp Lejeune (MCBCL) near Jacksonville, NC. To properly contextualize marsh parameters and processes across a range of tidal influence, ...

A guide to monitoring reef fish in the National Park Service's South Florida/Caribbean Network

The goal of this guide is to provide the framework for park managers and researchers to create or enhance a reef fish monitoring program within areas monitored by the SFCN. The framework is expected to be applicable to other areas ...

A guinea pig's tale: learning to review end-to-end marine ecosystem models for management applications

A shift towards ecosystem-based management in recent decades has led to new analytical tools such as end-to-end marine ecosystem models. End-to-end models are complex and typically simulate full ecosystems from oceanography to foodwebs and fisheries, operate on a spatial framework, ...

A high-resolution pre-operational forecast model of circulation on the Texas-Louisiana continental shelf and slope

A new pre-operational model of circulation over the Texas-Louisiana continental shelf and slope, based on the Regional Ocean Modelling System (ROMS) is presented. The model is designed with a number of practical applications in mind: to predict oil spill trajectories, ...

A modeling study of physical controls on hypoxia generation in the northern Gulf of Mexico

The Louisiana shelf (LA shelf) in the northern Gulf of Mexico experiences hypoxic conditions every summer due to the combination of eutrophication and strong water column stratification. Here we use a three-dimensional circulation model coupled with a simple oxygen model ...

A Novel Antibody-Based Biomarker for Chronic Algal Toxin Exposure and Sub-Acute Neurotoxicity

The neurotoxic amino acid, domoic acid (DA), is naturally produced by marine phytoplankton and presents a significant threat to the health of marine mammals, seabirds and humans via transfer of the toxin through the foodweb. In humans, acute exposure causes ...

General Pages

Gulf of Mexico

Harmful Algal Bloom ForecastsIn the Gulf of Mexico, some harmful algal blooms are caused by the microscopic algae species Karenia brevis, commonly called red tide. Karenia brevis blooms can cause ...

Harmful Algae from Satellite for Southwest Florida

Harmful Algal Bloom Monitoring SystemAlgal Blooms from Satellite for Southwest FloridaKarenia brevis is present in water samples, so blooms are likely to be Karenia brevis. To access the Florida Gulf ...

Harmful Algal Bloom Monitoring System

Harmful algal blooms (HABs) occur when algae—simple plants that live in the sea and freshwater—grow out of control and sometimes produce toxins harmful to people and animals. Only a small ...

Tampa Bay

Harmful Algal Bloom Monitoring System: Southwest FloridaThis page shows algal blooms in Tampa Bay. Blooms of some different types of algae may be present. In lower Tampa Bay, Karenia brevis ...

NOAA Internship Opportunities

Validation of Fish Age Using A Novel Amino Acid Ap...

A key component in understanding a fishery’s status is to understand its age structure; what proportion of the population is of a given age. For fishes this is typically done ...
Internships, Research, New Jersey

Estimating Performance of Early Life-stages of Wil...

Fish display plasticity in response to environmental variables in nature and in captive populations such as aquaculture.  In a natural setting, the scope for response by fish early life-stages (ELS) ...
Internships, Research, New Jersey

Tracking of Caribbean Corals Outplanted from Nurse...

Coral restoration is an increasingly popular technique for addressing coral population declines and limited recovery. There are a multitude of organizations propagating corals in nurseries for use in population enhancement ...
Internships, Policy, Florida

Oyster ecosystem services: phosphate analysis of t...

Oysters can provide many environmental benefits, including water filtration, habitat for wild fish, and a source of sustainable local seafood. Oysters contain nitrogen and phosphorus in their tissue and shell, ...
Internships, Research, Connecticut

Monitoring underwater soundscapes with passive aco...

This project will support NMFS research on underwater soundscapes through analyzing passive acoustic data from the Noise Reference Station Network. The student will learn from and work alongside NOAA researchers ...

Communicating Protected Species Conservation in a ...

NOAA Fisheries Office of Protected Resources is seeking a student to develop and expand communications efforts on conserving threatened and endangered marine species in a changing climate. This work will ...

ESA-Listed Species Range Mapper (GIS)

Intern will work with NMFS GIS staff at the headquarters Office of Protected Resources and in the regions to develop new species range files for Endangered Species Act (ESA)-listed species ...
Internships, Research, Maryland

Participating in wetland restoration research and ...

The South Slough National Estuarine Research Reserve (Reserve) has received funds to restore upland forests and estuarine and non-tidal wetlands in the Wasson valley within the Reserve, to reduce invasive ...

Monitoring Water Quality Conditions and Eelgrass h...

The South Slough National Estuarine Research Reserve (Reserve) began monitoring water column parameters in 1995 and eelgrass (Zostera marina) in 2004 in order to understand long-term trends in water quality ...
Internships, Research, Oregon

Geospatial Investigations of Coastal and Great Lak...

Seeking students with geospatial modeling, computer vision, and/or machine learning capabilities to join a group of exciting, innovative scientists mapping seafloor communities. Projects include: 1) advancing applications of computer vision ...
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