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Projects

Acoustic Tracking of Fish Movements to Support Hab...

We are monitoring the movement and residence time of fish in several coastal ecosystems. Our objectives are to document habitat preferences of fish, the timing and scales of their mobility, and ...
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Aggression is a Symptom of Domoic Acid Poisoning i...

To gain a better understanding of symptoms experienced by California sea lions caused by the toxin domoic acid, we are studying the relationship between aggression and seizure behavior in laboratory ...
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An Assessment of Chemical Contaminants in Sediment...

We studied the coastal waters of southwest Puerto Rico to find out what kind and how much pollution (chemical contaminants) are in sediments and corals (Porites astreoides) and how that ...
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An Assessment of Fisheries Species to Inform Time-...

Environmental windows or moratoria are used by federal and state regulators in resource management to temporarily reduce adverse environmental impacts associated with coastal development. Seasonal restrictions on construction activities can ...
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An Early Warning System for Pseudo-nitzschia Harmf...

Blooms of some species of the diatom Pseudo-nitzschia produce a neurotoxin that accumulates in shellfish, which can cause illness and even death in humans who eat them. Shellfish managers monitor ...
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An Ecological Assessment to Support NOAA’s Choptan...

The Choptank watershed is an ecologically and economically valuable resource and designated Habitat Focus Area. We are collecting and synthesizing biological, chemical, and physical data to characterize the condition of ...
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An Ecological Characterization of the Marine Resou...

We studied the coastal waters of Vieques, Puerto Rico, looking at fish and bottom-dwelling animals, contaminants in sediments and corals, and nutrient levels in surface waters. We also mapped the ...
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An Economic Analysis of Shipping Costs Related to ...

Through an analysis of shipping costs, we provided scientific guidance to the Channel Islands National Marine Sanctuary (CINMS) and other agencies, regarding the economic effects of potential management measures that ...
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Analysis of Marine Ecological Information Gaps in ...

We compiled and analyzed biological and ecological data to identify information voids in support of the National Park Service’s (NPS) management of marine resources within its jurisdiction. The biological and ...
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Analysis of the Distribution and Abundance of Grou...

We developed maps of occurrence and relative abundance for selected groundfish off the coasts of California, Oregon, and Washington, within the California Current Large Marine Ecosystem (CCLME). Our project supports ...
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News

NOAA Evaluates Using Mussel Watch Program to Monit...

Amy V. Uhrin (left), NOAA’s Marine Debris Program, and Ed Johnson, NOAA's Mussel Watch Program, collect samples of driessenid mussels on a NOAA/GLERL research vessel in Lake Michigan, summer 2018 ...
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Marine Heatwaves Fuel Harmful Algal Blooms Off US ...

Recreational razor clamming can bring thousands of visitors to the Washington coast. Toxins concentrated in razor clam and Dungeness crab fisheries have caused economic damage to coastal communities. Repeated marine ...
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Hydro-Financial Watershed Modeling for Environment...

NCCOS has sponsored a study to determine the fair interest rate and return period for a new type of financial instrument called an Environmental Impact Bond. The study examines feasibility ...
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NCCOS Supports Expansion of Red Tide Respiratory F...

This photo, taken while conducting aerial surveys for manatee conservation studies, clearly shows red tide off Florida’s Southwest coastline during the 2017–2019 bloom. Credit: Mote Marine Laboratory’s Manatee Research Program ...
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Shoreline Armoring Promotes Spread of Invasive Ree...

A stand of Phragmites australis. Credit USDA. An NCCOS-funded study found that shoreline armoring in Chesapeake Bay promotes the spread of the invasive common reed (Phragmites australis) by stimulating greater ...
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HAB Toxin of Unknown Origin Linked to a Dinoflagel...

Dinophysis norvegica. Credit WHOI. The biological source of Dihydrodinopyhysistoxin-1 (aka dihydro-DTX1), a toxin that causes diarrhetic shellfish poisoning and once described from a marine sponge, is of yet unknown. In ...
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NOAA Mussel Watch Assesses Condition of Coastal Co...

Report cover: A Synthesis of Ten Years of Chemical Contaminants Monitoring in National Park Service - Southeast and Southwest Alaska Networks in Collaboration with the NOAA National Mussel Watch Program ...
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Visually Exploring the Deep Sea Using Free and Ope...

NCCOS’ Will Sautter at work mapping benthic topography at sea. Credit NOAA NCCOS. A new data visualization of deep sea life and topography has been created by NCCOS’ GIS Analyst, ...
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Coral Assessment and Restoration Results Released ...

In September 2017, major hurricanes Irma and Maria impacted Puerto Rico (PR) and the U.S. Virgin Islands (USVI) and caused considerable damage to shallow coral reefs. A newly released NOAA ...
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Consequences of a “Forever Chemical” Exposure on E...

A research collaboration between NCCOS scientists and the National Institute of Standards and Technology (NIST) has documented the negative effects of perfluorooctane sulfonate (PFOS) on the health of the Eastern ...
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Products

Maps, Tools & Applications

We conducted benthic habitat mapping of shallow-water coral reef areas off Puerto Rico and the U.S. Virgin Islands to inventory the coral reefs and related bottom types. Such an inventory is needed for successful coral reef ecosystem management. This represents the first U.S. coral reef area to be mapped under the purview of the U.S. Coral Reef Task Force.
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Since 2004, we have been conducting seafloor mapping of the U.S. Caribbean, to fill critical informational gaps to support improved management measures in the U.S. Virgin Islands and Puerto Rico, targeting high priority sites identified by Jurisdictional managers. This project uses NOAA ship and aircraft to collect and provide detailed information from which we can produce maps of benthic habitats.
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We mapped the shallow-water benthic habitats of two areas off southwest Puerto Rico. This effort improves on previous NOAA benthic habitat maps by using more recent imagery, a smaller minimum mapping unit, and a refined classification scheme. The new maps will support ongoing conservation and management efforts in the region, including restoration of Guánica Bay.
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We developed benthic habitat maps for shallow areas (< 30 m) around St. John and moderate-depth areas (30–60 m) south of St. John in the U.S. Virgin Islands. These maps are helping local managers develop place-based strategies to address and remedy specific threats to coral reefs inside Virgin Islands National Park and the Virgin Islands Coral Reef National Monument. Project PageView Product

The online Benthic Habitat Viewer (BHV) database, developed and managed by the National Centers for Coastal Ocean Science (NCCOS), provides easy access to a large database of underwater imagery characterizing coral reef organisms and habitats. The database holds over 9000 underwater seafloor images, taken during mapping missions from 2004-2006 in Puerto Rico and the U.S. Virgin Islands.
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This page provides access to NOAA aerial digital photos (1999 and older) from Hawaii, U.S. Virgin Islands, and Puerto Rico.
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BIOMappers let you interactively view data, aerial imagery, dive photography, underwater video and related publications developed for the benthic habitat mapping of many U.S. coral reefs. In addition to viewing benthic habitat data, you can examine the attributes of the data and show different thematic representations. Photos and videos taken during dive missions are linked to the location of the dives.
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This Data Explorer Map contains ecological and socioeconomic datasets including management boundaries, human use activities, fish and oyster surveys, and benthic habitats in the NOAA Choptank Habitat Focus Area (HFA) Ecosystem Assessment. The tool allows managers, stakeholders and the general public to visualize data that assists with decision-making about management of the ecosystem in the Choptank watershed.
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BIOMappers let you interactively view data, aerial imagery, dive photography, underwater video and related publications developed for the benthic habitat mapping of many U.S. coral reefs. In addition to viewing benthic habitat data, you can examine the attributes of the data and show different thematic representations. Photos and videos taken during dive missions are linked to the location of the dives.
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BIOMappers let you interactively view data, aerial imagery, dive photography, underwater video and related publications developed for the benthic habitat mapping of many U.S. coral reefs. In addition to viewing benthic habitat data, you can examine the attributes of the data and show different thematic representations. Photos and videos taken during dive missions are linked to the location of the dives.
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Data & Publications

A comparison of seafloor habitats and associated benthic fauna in areas open and closed to bottom trawling along the central California continental shelf

A number of studies have shown that mobile, bottom-contact fishing gear (such as otter trawls) can alter seafloor habitats and associated biota. Considerably less is known about the recovery of these resources following such disturbances, though this information is critical ...
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A comprehensive investigation of mesophotic coral ecosystems in the Hawaiian Archipelago

Although the existence of coral-reef habitats at depths to 165 m in tropical regions has been known for decades, the richness, diversity, and ecological importance of mesophotic coral ecosystems (MCEs) has only recently become widely acknowledged. During an interdisciplinary effort ...
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A coupled physical-biological model of the Northern Gulf of Mexico shelf: model description, validation and analysis of phytoplankton variability

The Texas-Louisiana shelf in the Northern Gulf of Mexico receives large inputs of nutrients and freshwater from the Mississippi/Atchafalaya River system. The nutrients stimulate high rates of primary production in the river plume, which contributes to the development of a ...
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A decade and a half of Pseudo-nitzschia spp. and domoic acid along the coast of southern California

Blooms of the marine diatom genus Pseudo-nitzschia that produce the neurotoxin domoic acid have been documented with regularity along the coast of southern California since 2003, with the occurrence of the toxin in shellfish tissue predating information on domoic acid ...
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A guide to monitoring reef fish in the National Park Service’s South Florida/Caribbean Network

The goal of this guide is to provide the framework for park managers and researchers to create or enhance a reef fish monitoring program within areas monitored by the SFCN. The framework is expected to be applicable to other areas ...
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A guinea pig’s tale: learning to review end-to-end marine ecosystem models for management applications

A shift towards ecosystem-based management in recent decades has led to new analytical tools such as end-to-end marine ecosystem models. End-to-end models are complex and typically simulate full ecosystems from oceanography to foodwebs and fisheries, operate on a spatial framework, ...
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A high-resolution pre-operational forecast model of circulation on the Texas-Louisiana continental shelf and slope

A new pre-operational model of circulation over the Texas-Louisiana continental shelf and slope, based on the Regional Ocean Modelling System (ROMS) is presented. The model is designed with a number of practical applications in mind: to predict oil spill trajectories, ...
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A modeling study of physical controls on hypoxia generation in the northern Gulf of Mexico

The Louisiana shelf (LA shelf) in the northern Gulf of Mexico experiences hypoxic conditions every summer due to the combination of eutrophication and strong water column stratification. Here we use a three-dimensional circulation model coupled with a simple oxygen model ...
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A Novel Antibody-Based Biomarker for Chronic Algal Toxin Exposure and Sub-Acute Neurotoxicity

The neurotoxic amino acid, domoic acid (DA), is naturally produced by marine phytoplankton and presents a significant threat to the health of marine mammals, seabirds and humans via transfer of the toxin through the foodweb. In humans, acute exposure causes ...
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A pilot study to determine the movements of buoy line used in the crab pot fishery to assess bottlenose dolphin entanglement

A pilot study on the characteristics of crab pot buoy line movements to assess bottlenose dolphin entanglement was conducted from 19 September to 30 September 2005 in the Charleston Harbor, Charleston, South Carolina. The objectives of this study were to ...
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General Pages

Red tide from Satellite for Southwest Florida

Harmful Algal Bloom Monitoring SystemKarenia brevis Red tide from Satellite for Southwest FloridaImages last updated: 01/21/2021 Click the next and previous arrows to view the most recent 13 usable images ...
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NOAA Internship Opportunities

Experimental Quantification of Life History and Ec...

This project uses experimental methods to quantify the effects of environmental factors on success of early life-stages of marine fishes. Each year we are involved in new experimental studies that ...
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Managing Protected Marine Species in Hawaii

Depending on the skill set and interest of the candidate, they may work on a 5-year review of a species listed under the Endangered Species Act (ESA), a status review ...
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Marine Debris Monitoring and Assessment Project

Note: This opportunity is for graduate students only. The Marine Debris Monitoring and Assessment Project (MDMAP) is the NOAA Marine Debris Program’s flagship citizen science initiative, which engages volunteers in ...
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Comparative Morphology and anatomy of the new worl...

Comparative morphology and anatomy of the new world rhinopterid rays The extant rhinopterid (cownose) rays are a morphologically conservative group. Species within this family resemble each other so closely as ...
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Sea Turtle Ecology Science Communication

Our Turtle Ecology team would like to work with a detail-oriented, self-motivated student who has a passion for bringing marine science into the public realm. Our collaborative group of federal, ...
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Phytoplankton composition and optics of the Northe...

Phytoplankton composition is a critical component of aquatic food web structure, societally important fisheries, and human health. These internships are part of a larger project to test and evaluate phytoplankton ...
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Science Communication

Seeking a highly creative data visualization designer/developer STUDENT INTERN who is already knowledgeable in website design, has great graphic design skills and is looking to enhance their skill set and ...
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(Science) Investigating animal presence throughout...

Intern will assist in data management and processing for several on-going sanctuary research projects, including acoustic telemetry downloads and identifications. Expected product may include some analyses of acoustic telemetry data, ...
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Understanding NOAA’s Benefit to Society

NOAA's responsibilities range from weather and climate forecasting to ensuring the sound management of the nation’s coastal and ocean resources. In fulfilling its mission, the agency’s programs create economic value ...
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Evaluating 10 years of Teachers Getting Muddy in a...

The intern will work with the Reserve Education Coordinator to plan, prepare for, teach, and evaluate the Teachers on the Estuary (TOTE) course the last week in June, 2019 entitled ...
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