Data and Reports

Explore our library of NCCOS Technical Memos and various data sets. Filter by the type of publication, research category, region or contact.

2000 years of sustainable use of watersheds and coral reefs in Pacific Islands: A review for Palau

In Palau and everywhere in the world, coastal coral reefs are threatened by sedimentation resulting from land clearing in the watersheds. Palau's largest island of Babeldaob is particularly susceptible to significant erosion due to its steep topography, high rainfall, and highly erodible volcanic soil. Previous studies have shown the damaging ...
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A Biogeographic Assessment off North/Central California: In Support of the National Marine Sanctuaries of Cordell Bank, Gulf of the Farallones and Monterey Bay. Phase II Environmental Setting and Update to Marine Birds and Mammals

This document is Phase II of a biogeographic assessment completed in 2004, described below. In the spring of 2001, NOAA's National Marine Sanctuary Program (NMSP) and National Centers for Coastal Ocean Science (NCCOS) launched a project to assess biogeographic patterns of selected marine species and habitats found within and adjacent ...
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A changing nutrient regime in the Gulf of Maine

Recent oceanographic observations and a retrospective analysis of nutrients and hydrography over the past five decades have revealed that the principal source of nutrients to the Gulf of Maine, the deep, nutrient-rich continental slope waters that enter at depth through the Northeast Channel, may have become less important to the ...
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A coastal community vulnerability assessment for the Choptank Habitat Focus Area

This report presents a framework and provides findings from a community vulnerability assessment analysis conducted in the Choptank Habitat Focus Area (HFA) within the Chesapeake Bay. Due to the strong connectivity between Chesapeake Bay communities and their environment, the risks associated with flooding, coastal storms, and sea level rise are ...
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A comprehensive investigation of mesophotic coral ecosystems in the Hawaiian Archipelago

Although the existence of coral-reef habitats at depths to 165 m in tropical regions has been known for decades, the richness, diversity, and ecological importance of mesophotic coral ecosystems (MCEs) has only recently become widely acknowledged. During an interdisciplinary effort spanning more than two decades, we characterized the most expansive ...
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A coupled physical-biological model of the Northern Gulf of Mexico shelf: model description, validation and analysis of phytoplankton variability

The Texas-Louisiana shelf in the Northern Gulf of Mexico receives large inputs of nutrients and freshwater from the Mississippi/Atchafalaya River system. The nutrients stimulate high rates of primary production in the river plume, which contributes to the development of a large and recurring hypoxic area in summer, but the mechanistic ...
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A guinea pig’s tale: learning to review end-to-end marine ecosystem models for management applications

A shift towards ecosystem-based management in recent decades has led to new analytical tools such as end-to-end marine ecosystem models. End-to-end models are complex and typically simulate full ecosystems from oceanography to foodwebs and fisheries, operate on a spatial framework, and link to physical oceanographic models. Most end-to-end approaches allow ...
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A high-resolution pre-operational forecast model of circulation on the Texas-Louisiana continental shelf and slope

A new pre-operational model of circulation over the Texas-Louisiana continental shelf and slope, based on the Regional Ocean Modelling System (ROMS) is presented. The model is designed with a number of practical applications in mind: to predict oil spill trajectories, investigate the mechanisms controlling seasonal hypoxia, and to understand the ...
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A Manual of Previously Recorded Non-indigenous Invasive and Native Transplanted Animal Species of the Laurentian Great Lakes and Coastal United States

This manual presents geographic information by state of occurrence, and descriptions of the socio-economic impact created by the invasion of nonindigenous and native transplanted animal species in the Laurentian Great Lakes and the coastal waters of the United States. It is not a comprehensive literature review, but rather is intended ...
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A modeling study of physical controls on hypoxia generation in the northern Gulf of Mexico

The Louisiana shelf (LA shelf) in the northern Gulf of Mexico experiences hypoxic conditions every summer due to the combination of eutrophication and strong water column stratification. Here we use a three-dimensional circulation model coupled with a simple oxygen model to examine the physical controls on hypoxia generation on the ...
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A new encrusting deep-water coral reef alga, Peyssonnelia incomposita (Peyssonneliaceae, Rhodophyta), from Puerto Rico, Caribbean Sea

A new Peyssonnelia species is described from deep-water habitats in Puerto Rico as well as the U.S. Virgin Islands. Peyssonnelia incomposita is distinctive when living due its background orange coloration with highly contrasting bright yellow highlights. Internally the thallus is distinguished by abundant cell fusions that occur both laterally and ...
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A new species of Atergopedia (Copepoda: Harpacticoida: Novocriniidae) from a Caribbean mesophotic reef

Coordinated research efforts in mesophotic coral reefs are only a decade old, but have already produced exciting findings in ecology, physiology, geomorphology, population genetics, biodiversity, and taxonomy. In this taxonomic contribution, we describe both sexes of a new copepod species of the family Novocriniidae Huys and Iliffe in Zool Scr ...
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A new species of Longipedia Claus, 1863 (Copepoda: Harpacticoida: Longipediidae) from Caribbean mesophotic reefs with remarks on the phylogenetic affinities of Polyarthra

Mesophotic coral reefs are largely unexplored nearshore habitats. We present illustrations of both sexes of a new copepod species of the family Longipediidae Sars, 1903 collected via scuba-diving with tri-mix rebreathers from mesophotic coral reefs in Puerto Rico as an example of the rich fauna encountered in these habitats. The ...
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A Novel Antibody-Based Biomarker for Chronic Algal Toxin Exposure and Sub-Acute Neurotoxicity

The neurotoxic amino acid, domoic acid (DA), is naturally produced by marine phytoplankton and presents a significant threat to the health of marine mammals, seabirds and humans via transfer of the toxin through the foodweb. In humans, acute exposure causes a neurotoxic illness known as amnesic shellfish poisoning characterized by ...
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A pilot study to determine the movements of buoy line used in the crab pot fishery to assess bottlenose dolphin entanglement

A pilot study on the characteristics of crab pot buoy line movements to assess bottlenose dolphin entanglement was conducted from 19 September to 30 September 2005 in the Charleston Harbor, Charleston, South Carolina. The objectives of this study were to determine: 1) the movements of the buoy line in the ...
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A quantitative genetic approach to assess the evolutionary potential of a coastal marine fish to ocean acidification

Assessing the potential of marine organisms to adapt genetically to increasing oceanic CO2 levels requires proxies such as heritability of fitness-related traits under ocean acidification (OA). We applied a quantitative genetic method to derive the first heritability estimate of survival under elevated CO2 conditions in a metazoan. Specifically, we reared ...
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A quantitative real-time PCR assay for the identification and enumeration of Alexandrium cysts in marine sediments

Harmful algal blooms (HABs) are a global problem that affects both human and ecosystem health. One of the most serious and widespread HAB poisoning syndromes is paralytic shellfish poisoning, commonly caused by Alexandrium spp. dinoflagellates. Like many toxic dinoflagellates, Alexandrium produces resistant resting cysts as part of its life cycle ...
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A Reduced Complexity, Hybrid Empirical-Mechanistic Model of Eutrophication and Hypoxia in Shallow Marine Ecosystems

Numerical simulation models have a long history as research tools for the study of coastal marine ecosystems, and are increasingly being used to inform management, particularly related to nutrient-fueled eutrophication. Demand for modeling assessments is rapidly increasing, and managers need generally applicable tools that can be rapidly applied with limited ...
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A surveillance strategy for invasive species of concern in deepwater habitats of the Northwestern Hawaiian Islands

This document provides strategies to detect deepwater invasive species in the Northwestern Hawaiian Islands (NWHI) in support of the Papahanaumokuakea Marine National Monument (PMNM). The strategies use technical diving to conduct visual surveys and focus on two invasive species of growing concern, the octocoral Carijoa riisei and the red alga ...
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A topological approach for quantitative comparisons of ocean model fields to satellite ocean color data

In an effort to more fully employ underutilized satellite observations in ocean modeling, this work demonstrates a method for quantifying the agreement between time-evolving spatial features evident in fields of differing, but functionally related, variables that are more commonly compared qualitatively via visual inspection. This is achieved through application of ...
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