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NCCOS Research Project

Benthic Habitat Characterization and Climate Change Vulnerability Assessment of West Coast Sanctuaries

Primary Contact(s): peter.etnoyer@noaa.gov
This project began in April 2012 and is Ongoing

Cordell Bank, Greater Farallones and Channel Islands National Marine Sanctuaries harbor diverse communities of deep-water fish, corals and sponges. Corals and sponges associated with groundfish habitat face many threats, including impacts from bottom fishing, ocean warming and ocean acidification. This study provides a baseline characterization of deep-water benthic habitats and examines the vulnerability of deep-sea corals to environmental change in existing and proposed marine sanctuary areas.

Why We Care

Yellowtail rockfish over boot sponges (Staurocalyptus) on Rittenburg Bank. Credit: NOAA/Marine Applied Research and Exploration.

Together, the Cordell Bank (CBNMS), Greater Farallones (GFNMS), and Channel Islands National Marine Sanctuaries (CINMS) protect a combined area of more than 6,000 square miles off the California coast. Deep-sea corals and sponges in these Sanctuaries form structural habitat for many species of rockfish, including fish whose stocks are rebuilding from overfishing. Establishing a baseline understanding of species and their habitats is critical in managing new and expanded protected areas, to gauge their status and resilience to future impacts.

What We Are Doing

Our project objectives and some of our major activities and findings are listed below.

  • Provide a baseline characterization of deep-water benthic habitats in areas proposed for expansion near Cordell Bank and Greater Farallones National Marine Sanctuaries, including groundfish, coral, sponges, and physical habitat.
    • Benthic surveys were conducted at GFNMS and CBNMS in 2012 and 2014, using a remotely operated vehicle (ROV) aboard the RV Fulmar. These surveys characterized hard and soft bottom habitats using photos and video from 50–400 m depth over the course of 19 dives. See these reports for more: Etnoyer et al. 2014, Graiff et al. 2016.
  • Assess the vulnerability and resilience of deep-water corals through an analysis of carbonate chemistry in and around Lophelia pertusa corals in the Channel Islands National Marine Sanctuary (Caldow et al 2015).
    • We assessed aragonite saturation state through a time-series of water chemistry measures (pH, total alkalinity) using CTD-rosette aboard NOAA ship Bell M Shimada in 2015.
    • The water chemistry results indicate that deep-water aragonite saturation values are persistently low adjacent to Lophelia and Desmophyllum colonies, lower than it is in other ocean basins. Southern California is a ‘natural laboratory’ for understanding the effects of ocean acidification on stony corals, as the corals in CINMS are growing in a relatively extreme environment with respect to pH and aragonite saturation state.
    • Lophelia colonies were collected using the ROV, and maintained alive for laboratory experiments on the effects of reduced pH on growth and feeding at Temple University in Philadelphia.
  • Contribute to outreach, education, and public awareness of deep-water habitat.
    • A lesson plan and curriculum about benthic habitat were developed for the West Coast Sanctuaries as a result of this work (Hohman and Francis 2016).   
    • High school students at George Washington High School in San Francisco, CA viewed real scientific transects, and graphed and analyzed their data to evaluate the composition of deep-sea coral communities according to habitat type, depth and temperature.

In addition to NCCOS, the project team includes NOAA partners from the Office of National Marine Sanctuaries (Cordell Bank National Marine Sanctuary, Greater Farallones National Marine Sanctuary, and Channel Islands National Marine Sanctuary), Deep Sea Coral Research and Technology Program, the Office of Marine and Aviation Operations. The United States Geological Survey at Menlo Park also partnered with us, as well as the California Academy of Sciences.

What We Are Finding

Our benthic surveys aboard RV Fulmar in 2012 used the Marine Applied Research and Exploration ROV Beagle to 400 m depth. The survey in GFNMS found high abundance of healthy corals and sponges associated with rocky habitats at Rittenburg Bank and Cochrane Bank (Etnoyer et al. 2014).  Strong associations were seen among corals, sponges, and commercial rockfish, including yelloweye rockfish, a stock which is currently listed by NOAA’s National Marine Fisheries Service as a stock in the rebuilding phase (year 14 of a 70-year plan). One new species of deep-sea coral was collected and described by California Academy Scientists, Chromoplexaura markii (Williams, 2013)

A news species of octocoral (Chromoplexaura markii) with a rosy rockfish (Sebastes rosaceus) at 86 meters depth on Rittenburg Bank. Credit: NOAA/Marine Applied Research and Exploration.

In 2014 we conducted surveys from the RV Fulmar using the sanctuary ROV in areas at the head of Bodega Canyon in CBNMS and nearby at the ‘Football’ in GFNMS, in areas that were proposed for sanctuary expansion and later included in expanded sanctuary boundaries. The CBNMS surveys found corals and sponges in mixed habitat at depths of 273–306 meters.  Sea pens, mushrooms corals, and boot sponges were the most common of these. In addition, many other invertebrates were observed including sea stars, urchins, anemones, and spot prawns. Rockfishes and flatfishes made up the majority of fish species observed. The surveys in GFNMS at the ‘Football’ found corals and sponges in mixed and hard substrate at depths of 180–280 meters.  Corals included cup corals, sea whips, and sea pens. A second new species of deep-sea coral was collected and described by California Academy Scientists, Swiftia farallonesica (Williams and Breedy, 2016).  Sea urchins were abundant, and other invertebrates included sea stars, spot prawns, and anemones. Rockfishes were the most abundant fish, followed by flatfish.  A deep-sea nursery habitat for skates and catsharks was also found during this survey, within proposed sanctuary expansion areas of GFNMS (Graiff et al. 2016).  A significant hard substrate feature consisting of sedimentary rock in a ledge formation provided habitat for many fish, corals, and other invertebrates.

Our benthic surveys in CINMS in 2014 and 2015 found Lophelia pertusa coral colonies growing in low pH environments between 50–300 m depth; we recorded pH values as low as 7.6, compared to surface values of 8.0. Live colonies were collected for laboratory experiments and water chemistry measures (pH, total alkalinity) were made using a CTD-rosette aboard the NOAA ship Bell M Shimada in 2015. The depth of the aragonite saturation horizon was found to be much shallower (about 70 m) in the CINMS compared to the North Atlantic (2,500 m or more). Lophelia in CINMS appears to persist in waters that are continuously under-saturated with respect to aragonite.

Benefits of Our Work

The Pacific Fishery Management Council (Council), fishermen, and several non-profit conservation organizations recognized our survey work in proposals for new fisheries openings in soft bottom areas, and new fisheries closures in rocky areas along the U.S. West Coast. Deep-sea benthic surveys conducted by NOAA and partners off the U.S. Pacific Coast were cited as an integral part of the new management measures. These decisions had the full support of the fishing community.

Key products and outcomes of this NCCOS project to date are as follows.

  • New data to support for the 2015 expansion of Cordell Bank and Greater Farallones National Marine Sanctuaries.
  • Support for new Essential Fish Habitat designations in 2018, including proposals to limit bottom trawling.
  • A new, online lesson plan and curriculum about deep-sea coral communities, the threats that face them (bottom fishing, climate change) and what people can do to help, was developed based on these field surveys.
  • Our data products are being used by the Pacific Fisheries Management Council (PFMC) and non-profit organizations, as well as the office of National Marine Sanctuaries for management, planning, education and outreach.  
  • Two new species of deep-water gorgonian corals were discovered and described from Sanctuary waters.
  • Two benthic characterization reports (Etnoyer et al. 2014, Graiff et al. 2016) describing our work.

Data from these surveys have been used to support recent expansions for the boundaries of the Cordell Bank NMS and Greater Farallones NMS, which added protection for 2,700 square miles in 2015. In 2018, the Pacific Fishery Management Council opened new areas to bottom trawling to support fishing, and closed new areas to bottom trawling as Essential Fish Habitat, in order to protect deep-sea corals and sponges, as well as groundfish.

Our research has raised regional and international awareness about the status of deep-sea corals and their aragonite saturation state along the U.S. West Coast. Furthermore, this project contributes still images, ROV video, and water chemistry information to outreach and education programs. The project also makes these products available for additional research and analysis.

Next Steps

Recent management actions undertaken by the Council have placed some areas off limits to bottom fishing under the assumption that these areas are likely contain corals and sponges, but even though these areas have never been surveyed using an ROV to confirm these assumptions. Similarly, other areas have been opened to fishing because these areas are believed to be soft bottom, sandy areas. More surveys are needed to characterize the benthic habitats in these areas, to explore and to verify these assumptions.  

NOAA’s CBNMS, GFNMS, Monterey Bay NMS (MBNMS) and NCCOS are collaborating and leveraging resources to study more seafloor habitat off north central California in August 2018. Using the NOAA ship Bell M. Shimada, we will explore newly expanded areas of the sanctuaries that have never been explored before. The team will visually and systematically survey deep-water benthic habitats, with the goal of characterizing deep-sea habitats and communities (corals, sponges, groundfishes, etc.) to inform sanctuary management of living resources.

The Team will also be collecting samples. Researchers from the University of Edinburgh in the United Kingdom are interested in obtaining new samples of Lophelia and Desmophyllum corals to support studies that correlate pH and the boron isotope to understand change over time. New water samples are also needed for carbonate chemistry, in order to correlate aragonite saturation state to coral health and condition. Coral health can be measured through areal extent, coralite size, branch length, density, and skeletal porosity, among other things.

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