Assessing marine mammal stocks gives us valuable information on population trends, productivity rates, estimates of human-caused mortality and other sources of serious injury, and more. These assessments allow us to evaluate the effectiveness of conservation and recovery measures, and to adjust management approaches as needed. The National Marine Fisheries Service (NMFS) is actively transitioning to a reproducible workflow for marine mammal Stock Assessment Reports (SARs) by utilizing Quarto and GitHub to automate documentation and enhance scientific transparency and efficiency. We are transitioning to a standardized process to move away from manual reporting toward “code-to-document” automation, allowing NMFS to use Quarto to combine narrative text with code. This is currently being piloted by Alaska Fisheries Science Center and Pacific Islands FIsheries Science Center, with the potential goal of all marine mammal SARs transitioning to the reproducible process.
This internship will take place with NMFS Office of Protected Resources (OPR) and Office of Science and Technology (OST), who are responsible for coordinating review and publishing final SARs. The intern selected for this project would help identify what key output data we may need to easily query from the SARs, and develop a proof of concept for how these data would be used and queried across all the different regional SAR repositories. This project would support NMFS’ policies and goals of transparency, open science, and increase efficiency in producing marine mammal SARs.